The human immune system is an intricate network of cells, tissues, and organs that work in concert to defend our bodies against threats. Mass cytometry has revolutionized our ability to map this complex system with unprecedented detail. Let’s explore how this technology is reshaping our understanding of immune variation, novel cell subsets, and age-related changes.
Mapping the Human Immune System
The quest to map the human immune system in its entirety is akin to creating a detailed atlas of a vast, unexplored continent. Mass cytometry has provided us with the tools to embark on this ambitious journey.
A seminal paper by Brodin and Davis (2017) in Nature Reviews Immunology, “Human immune system variation,” laid the groundwork for understanding the complexity and variability of the human immune system. They highlighted the importance of comprehensive immune profiling in understanding health and disease.
Carr, E.J., et al. (2016) published a study in Nature Immunology titled “The cellular composition of the human immune system is shaped by age and cohabitation.” This work used mass cytometry to profile the immune systems of 670 individuals aged 2 to 86 years old.
The researchers found that the variability in immune cell frequencies between individuals was influenced by both age and environmental factors. Notably, they discovered that cohabitation had a significant impact on immune profiles, with adults who lived together showing more similar immune cell frequencies compared to individuals living apart.
This study demonstrates how mass cytometry can be used to comprehensively profile immune system composition across a large number of individuals, revealing insights into how both intrinsic factors like age and extrinsic factors like cohabitation shape immune variation.
Identifying Novel Immune Cell Subsets
The high-dimensional nature of mass cytometry data has allowed researchers to uncover previously unknown immune cell subsets, reshaping our understanding of immune function.
A groundbreaking study by Villani et al. (2017) in Science, cited over 2200 times, “Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors,” combined mass cytometry with single-cell RNA sequencing to identify new subsets of dendritic cells and monocytes. This work has had profound implications for our understanding of innate immunity and antigen presentation.

Age-related Changes in Immune Composition
As we age, our immune system undergoes significant changes, a process known as immunosenescence. Mass cytometry has been instrumental in characterizing these age-related shifts in immune composition.
A comprehensive study by Patin et al. (2018) in Nature Immunology, “Natural variation in the parameters of innate immune cells is preferentially driven by genetic factors,” used flow cytometry and single cell RNA sequencing to profile immune cell populations across a large cohort. They found that while genetics plays a significant role in immune variation, age-related changes were evident across the population.
Implications and Future Directions
The insights gained from comprehensive immune profiling have far-reaching implications:
- Personalized Medicine: Understanding individual immune variation could lead to more tailored therapeutic approaches, particularly in immunotherapy and vaccine development.
- Disease Susceptibility: Mapping immune profiles could help predict susceptibility to various diseases, enabling preventive interventions.
- Environmental Impacts: The finding that cohabitation influences immune profiles (Ramasubramanian et al., 2023 ; Carr et al. 2016) opens up new avenues for understanding how our environment shapes our health.
- Aging and Immunity: Characterizing age-related immune changes could lead to interventions to boost immune function in older adults.
As we continue to refine our mapping of the human immune system, we move closer to a holistic understanding of health and disease. The ability to comprehensively profile an individual’s immune status could become a routine part of medical care, much like how we currently use blood tests or genetic screening.
Mass cytometry has provided us with an unprecedented view of the human immune system in all its complexity. From uncovering novel cell subsets to revealing the impact of age and environment on immune function, this technology is reshaping our understanding of immunity. As we delve deeper into this intricate cellular landscape, we edge closer to a future where truly personalized immune-based therapies become a reality. The immune system, once a black box of mysterious interactions, is gradually revealing its secrets under the penetrating gaze of mass cytometry. With each new discovery, we write another chapter in the grand narrative of human biology, moving ever closer to a comprehensive understanding of the symphony of cells that protects and defines us.
Imagine my surprise when I stumbled upon the study by Carr et al. (2016) in Nature Immunology, titled "Cohabitation is associated with a greater resemblance of the human gut microbiome and immune system." These researchers discovered that people living together - couples, families, roommates - actually have immune systems that start to mimic each other over time. It's like our cells are having their own little house parties and swapping notes. This isn't just a quirky fact; it's mind-blowing science. Using single-cell data, they showed that our immune profiles shift to become more similar to those we live with. It's as if our bodies are playing an elaborate game of "immune system charades," and winning means becoming more like your housemates. So next time you're annoyed at your roommate for leaving dishes in the sink, just remember: your immune cells might be best friends.
Guillaume Beyrend
